1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatatacttgatataaagatcaatatttatcatatttcatgcttaaaagtcccttctattctaattcagcctgaatggttctctctttcttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGC
species | Glycine max |
transcript | GLYMA08G07670.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGEST: gi|31470792|gb|CD412820.1|CD412820
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
EST: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGEST: gi|192307420|gb|FK000762.1|FK000762
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
EST: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
aaaagtcccttctattctaattcagcctgaatggttctctctttcttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGC
ttctaat putative branch site (score: 2)
tggttctctctttctt putative PPT
tattctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatacttgatataaagatcaatatttatcatatttcatgcttaaaagtcccttctattctaattcagcctgaatggttctctctttcttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGC
-catatac
- - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcctga