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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcttatcaccctcttattacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaactgaaaaatacttatctattattttcatgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAA

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 11
gtaggtcttatcaccctcttat-----tacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaa-ctgaaaaatacttat--ctattattttcatgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAA
|||||| |    |    | ||      |     ||  |  |   || |  ||     |||||| |||||  | |   |  || | | || |    | |  ||||  | ||  | |  || | ||| ||||   | ||||| || |||||||| |||||  | ||||| ||||||||  |||| ||||| || ||||||||||||||||| || |  || ||| || | || 
gtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924507|gb|AW830533.1|AW830533
EST:     CAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAA                         GTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA
genomic: CAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtctta ... atgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaaattatttgaccaactgaaaaatacttatctattattttcatgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAA
         atttgac  putative branch site (score: 4)
                                        ttttcat  putative PPT
                 aactgaaaaatactta  TA-rich tract