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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgattattactcgtcttaaattaagtttctttgcgtatttgatgatttaattttttaacatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT

Basic information

species Glycine max
transcript GLYMA08G03760.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 10
---------gtttgtgattattactcgtcttaaattaagtttctttgcgtatttgatgatttaattttttaacatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
          |||   ||| | ||      || |   |     ||  |   |||    |  ||   | |     | || ||||| ||||||||| | ||||||||||| || ||| | || |||||| || |||| ||||||||| |||||||||||||| | ||| |  | |||||||||
gtactacaaatttcatattgtaaccttatgtataggcaacaaattatcccttttacatacatatgctctatctttatgcagATACTGGAATTACCTAAGGAAACAAACTTTTGTTCTTGAATCATATGTATCAAAGGTTAACTGGATGATGAACCGTGCACTATTTGCATCGCACTGCTAT

upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G061419_T01 (Zea mays), 3'ss of exon 10
----------------------------gtttgtgattattactcgtct-taaattaagtttctttgcgtatttgatgatttaattttttaacatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
                            |||| || | |      || |  |  |||| |     ||  |  || || ||  |  ||| |      || ||||| ||||||||| | ||||||||||| || ||| | ||||||||| || | ||||| |||||| |||||||||||||||| ||||| | ||| ||||||
atactttgggtttcttttctgtgcacatgtttatgctaaaccaatgtatgcatcttaactaatactgttttcttcat-atacatgtttgtttttcatgcagATACTGGAATTACCTCAGGAAACAAACTTTTGTTCTCGAGTCATATGTATCGAATGTAAACTGGATGATGAACCGTGCATTATTTACAAGCCATTGCTAT

upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtgattattactcgtcttaaattaagtttctttgc---gtatt------tgatgatttaattttttaacatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
|||| |||| ||| | | | | ||| |  |||| ||  |   |||||      ||||  |||   ||||| || |||||||||| ||||||||||||||||| |||||||| ||| | || |||||  |  | || ||||||||||| ||||| |||||||| ||| || |||||||||||
gtttttgat-att-cccttttcaaaatttgttttttcacatggtattccttgttgatcttttccctttttgacttgtgtagATACTGGAATTACTTGAGGAAGCAAACATTTGTTCTTGAATCATACATTTCGAAGGTTAACTGGGTTATGAATCGTGCATTATTTTCTTCCCACTGCTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846218|gb|BF071273.1|BF071273
EST:     GCCGTCTTTCCCCACCCCCTTGCAAGTGATCTTAATTTTGGAAG                         ATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAAC
genomic: GCCGTCTTTCCCCACCCCCTTGCAAGTGATCTTAATTTTGGAAGgtttgtgatt ... acatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttaaattaagtttctttgcgtatttgatgatttaattttttaacatgtgtagATATTGGAATTACTTGAGGAAACAAACATTCGTTTTGGAGTCATATTTAACAAATGTTAACTGGGTGATGAACCGTGCATTGTTTACTACCCACTGCTAT
                                        ttttaac  putative branch site (score: 2)
                       tatttgatgatttaat  TA-rich tract