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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcccatctatctttaatattcttgtaatttaaggctatctattgtagccccgacattctttattgtgaaacttactttgcttgaccatagtatacacgtagtcttgatttgttcaatgtagagaattgattatttttttttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG

Basic information

species Glycine max
transcript GLYMA08G01750.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 10
gttcccatctatctttaatattcttgta----atttaaggctatctattgtagccccgacattctttattgtgaaactt-actttgcttgaccatagtatacacgtagtcttga-tttgttcaatgtagagaattgattatttttttttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG
||| ||||||| | |||||| |||||||    ||||   ||| |||    |||||  |   |||||| || | | | || | ||| ||||| |||| | | ||     ||||||  || ||      | |  | |  | || | ||  |  | ||||||||| | || |||| ||||||||   ||||||||||||| ||||   ||||||||||||| |||||  ||||||| ||||| ||||||
gtttccatctaaccttaatactcttgtacttgattttgtgctttcttcattagccatgctcttctttgttctaagattttatttttcttgatcataatcttca-----tcttgagcttttttggaacataatacttgtcatatgttacttcttcagGACTTCATAGCAGGAAAACTTCCTTCACTTCCTGGTGAATTGCCAAACTTCAATGATTGGGAGAATCATCTGACAACAATATTCCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478861|gb|AW666435.1|AW666435
EST:     CACAGATATATCGACTGTACTGGAAAGACCTTCAGG                         GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: CACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
EST: gi|26047199|gb|CA784068.1|CA784068
EST:     TTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGG                         GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgtagtcttgatttgttcaatgtagagaattgattatttttttttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG
                              aattgat  putative branch site (score: 4)
                                    ttatttttttttatt  CT-rich tract
                     aatgtagagaattgat  TA-rich tract