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...taatgagtttcatttatgaataacctatgttcaaaatatatcatagattttggatctgttacgatttgtgtgccactgatgatttcgttgtgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTCTATGTTATCTGATGAGCAATATGCCCGATGAAGCACTTAATGATGCGA
species | Glycine max |
transcript | GLYMA08G01730.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTEST: gi|192299191|gb|FG992907.1|FG992907
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTEST: gi|15199823|gb|BI424029.1|BI424029
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTEST: gi|51337033|gb|CO980899.1|CO980899
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: CTGNNNNNCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
gattttggatctgttacgatttgtgtgccactgatgatttcgttgtgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTCTATGTTATCTGATGAGCAATATGCCCGATGAAGCACTTAATGATGCGA
gtgtaac putative branch site (score: 3)
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgagtttcatttatgaataacctatgttcaaaatatatcatagattttggatctgttacgatttgtgtgccactgatgatttcgttgtgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGTCTATGTTATCTGATGAGCAATATGCCCGATGAAGCACTTAATGATGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC