Sequence
atgc intronic sequence ATGC exonic sequencegtgtttttacaaacctagtttaagctttctagcatgcctattatgattgtcctgaatatcttaacatgcacctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC
Basic information
species | Glycine max |
transcript | GLYMA08G01640.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01640.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
gtgtttttacaaacctagtttaagctttctagcatgcctattatgattgtcctgaatatcttaacatgcacctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC
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--------gtaaagtaaagtgagacctgcttgt-----tatc-tgagtaatacaattagctaagctaagctttatgttcacattctttct----tttttctgactt-------tctctgatg-cagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
upper sequence: GLYMA08G01640.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 3'ss of exon 11
gtgtttttacaaacctagtttaagctttctagcatgcctattatgattgtcctgaatatcttaacatgcacctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC
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-----------ttcctggtttttgaattctcgttgaaatgagatgatacaactctacagcttaaaacaaatttctgaattt--------tgatgatgttctc--ttgaat-----ttgtactgcagCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9203287|gb|BE329511.1|BE329511EST: CAGAATTGAATTCCAATGCCGTTTACCTCACAGAAGATTTTTCCCCTAAG CTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGNNNNNNNT
genomic: CAGAATTGAATTCCAATGCCGTTTACCTCACAGAAGATTTTTCCCCTAAGgtgtttttac ... taaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC
tatttttctcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtttttacaaacctagtttaagctttctagcatgcctattatgattgtcctgaatatcttaacatgcacctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT