Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtcctgctccgtacttcctttttgagaattttttttctgatgaataagaaattttcttttagtaccagttcatttagtttctatacaaactaaaccgtttgttcttttggttggttactctaaaattgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG

Basic information

species Glycine max
transcript GLYMA08G00670.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00670.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagatgtcctgctccgtacttcctttttgagaattttttttctgatgaataagaaattttcttttagtaccagttcattta--gtttctatacaaactaaaccgtttgttcttt--tggttggttactctaaaattgactca--gAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
                                               | |  |    |   |  ||| ||     |   ||||   ||| |   |    || |  ||||  |||||  ||| |  | | | |  ||| |  |||  |||| |||||||||||||| ||||| || ||||||||||  || ||
----------------------------------------------gtaagcatctgacccttctttcgtcattttgactttacaatttttgatctcggtatatagttttatctttaatggctaatgattgttgaatgggttcacagAGCGCATCATGGTTTTGGCTGGGTTGGAGAGTGGGCAAATACAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193388939|gb|FK355238.1|FK355238
EST:     TGGAGAAAACAATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA                         AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
genomic: TGGAGAAAAC-ATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
EST: gi|193545172|gb|FK499899.1|FK499899
EST:     ATGGNG-AAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA                         AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
genomic: ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
EST: gi|208194090|gb|GD989851.1|GD989851
EST:     ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA                         AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
genomic: ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatacaaactaaaccgtttgttcttttggttggttactctaaaattgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
                                       tctaaaatt  TA-rich tract