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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttgttgtgtagacatttaaacacaagatttgttttgttctgatccttgaatcagcctatatgatgttctattgcagTGAACTTTCTGGGCTAGTGATGTCAGATGGGGCTGATACATCAAAGTCTGGATATCAATCTGTAGGTTTTGGAAATTCATTTGCCTTCAAATTTAAAGAT

Basic information

species Glycine max
transcript GLYMA08G00560.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427474|gb|CA938994.1|CA938994
EST:     TGGGACTCAGCTTTTAATCTAGAACCACCGGAAGATTCTGATACTCATAG                         TGAACTTTCTGGGCTAGTGATGTCAGATGGGGCTGATACATCAAAGTCTGG
genomic: TGGGACTCAGCTTTTAATCTAGAACCACCGGAAGATTCTGATACTCATAGgtaatcttgt ... tctattgcagTGAACTTTCTGGGCTAGTGATGTCAGATGGGGCTGATACATCAAAGTCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagatttgttttgttctgatccttgaatcagcctatatgatgttctattgcagTGAACTTTCTGGGCTAGTGATGTCAGATGGGGCTGATACATCAAAGTCTGGATATCAATCTGTAGGTTTTGGAAATTCATTTGCCTTCAAATTTAAAGAT
               ttctgat  putative branch site (score: 3)
                                            ttctatt  putative PPT
     atttgtttt  TA-rich tract