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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaattattctgtattgggagtgccagGTTTCAGAATCTAGGTGAGATGATGACCTTGGGAAGAAATGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCCTAGAAGGTTCTGTTGGTCAT

Basic information

species Glycine max
transcript GLYMA08G00520.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00520.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G08740.1 (Arabidopsis thaliana), 3'ss of exon 9
---------------------------------------------gtttaattattctgtattgggagtgccagGTTTCAGAATCTAGGTGAGATGATGACCTTGGGAAGAAATGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCCTAGAAGGTTCTGTTGGTCAT
                                             ||||||    | | || |     |  |||||||||||| |||||||||||||||||  | |||||| |||||||||| || || || ||||| ||||| ||||| || || |||||| |  ||||||| 
gtaaaactaatagactttttactgatctgtgtattgaaaacagaagtttaagctctgtttaatcttgtttgcagGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGATATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTCAC

upper sequence: GLYMA08G00520.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------------------------gtttaattattctgt-attgggagtgccagGTTTCAGAATCTAGGTGAGATGATGACCTTGGGAAGAAATGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCCTAGAAGGTTCTGTTGGTCAT
                                                                      | |  || |    || | |     || ||||||||||||| | ||||||||||||||  | ||||||||||||||||| ||||| ||||| || ||||| ||||| ||| | || ||  || |||| |||
ggtcaaaattaaatttgctaatgttttatgaaatgcatttatgagagtaacatccaaaaaaaacaatgttggtagatgagctggtgactttctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATTTCCCCGAGCTTCATTGAGGGGCTAACCTTGGAGGGACCTATTGGCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaattattctgtattgggagtgccagGTTTCAGAATCTAGGTGAGATGATGACCTTGGGAAGAAATGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCCTAGAAGGTTCTGTTGGTCAT
                                                                              tttaattattctgtat  TA-rich tract