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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaatatgcaattctttgttgtttttcattttattttatgaggttacttttagcatattctgataactatggtttatttctatttcatgtagCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACG

Basic information

species Glycine max
transcript GLYMA08G00400.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00400.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0044g01680.t01 (Vitis vinifera), 3'ss of exon 9
gttaaatatgcaattctttgttgtttttcattttattttatgaggttacttttagc-atattctgataactatg-----gtttatttctatttcat-gtagCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACG
||  |||       | |    |   |||||||  |||||    |||   |||| |   ||| || |||   ||      ||||| |  |  ||  | |||||| || || |||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||| |||||||  |||||
gtgtaattcttggatttaatgtacatttcattc-atttttgatggtaggttttggttgtatacttatactaatcttcttgtttactattggtttgttgtagCGACAACTATATGAAGCTTTTTTGAACAGTGAGATCGTTCTTTCAGCTTTTGATGGCTCACCATTGGCTGCAATTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402061|gb|EV271874.1|EV271874
EST:     TTTCTCAGAAACAGGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAG                         CGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTT
genomic: TTTCTCAGAAACAGGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGgttaaatatg ... tttcatgtagCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaggttacttttagcatattctgataactatggtttatttctatttcatgtagCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACG
                       tgataac  putative branch site (score: 2)
                                   tttatttctatttc  putative PPT
                                   tttatttctatttcat  TA-rich tract