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...gtttgtgagtagcgtcagtggagtttgttgtactgttttgctcttttctgctatcaaaattttaattagggactgattatgtttcttctatatatgatagGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGACAAGTGGCTTGAACAGCCTGGTTCTGTGAAAGCTAGGAGATACATGCACA
species | Glycine max |
transcript | GLYMA07G39690.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAAT GTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGACEST: gi|13181297|gb|BG352637.1|BG352637
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgatagGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGAC
EST: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAG-TGACATGGAAAAT GTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGAC
genomic: AATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATgtaagtagta ... tatatgatagGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGAC
ttctgctatcaaaattttaattagggactgattatgtttcttctatatatgatagGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGACAAGTGGCTTGAACAGCCTGGTTCTGTGAAAGCTAGGAGATACATGCACA
gactgat putative branch site (score: 3)
tttcttctat putative PPT
tatcaaaattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgagtagcgtcagtggagtttgttgtactgttttgctcttttctgctatcaaaattttaattagggactgattatgtttcttctatatatgatagGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGACAAGTGGCTTGAACAGCCTGGTTCTGTGAAAGCTAGGAGATACATGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
gtttgtg
- - - - - - - - -gtggagt
- - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - -tgttttg