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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtcccctatttttgttgccatatatataaggtgaagacacctactttccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTTCGTGTCATTATTGCACTGATAGTGTCACAGATAGTTC

Basic information

species Glycine max
transcript GLYMA07G39320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G064189_T01 (Zea mays), 3'ss of exon 3
------------------------------------------------------------------------gtagttccaagatgttagaattata-ttatacacgtcaa--agtatgattgtattatttgagtcccctatttttgttgccatatatataaggtgaagacacctactttccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTTCGTGTCATTATTGCACTGATAGTGTCACAGATAGTTC
                                                                        |  || | |   |   |     ||| |||||||  | |   ||| || ||| |||  ||  ||     |||    |  ||  ||  ||||  |  | |      |||  |  || ||||| || ||||| ||||||||||| ||||||||||  |||||||| |||||   ||| |||   ||  | || |  ||  |||| || |||||| |  |||
gtaagcaagcatatcataaatgtcctcatgtgttttctttagcattgcatctggcattgtgttgtttatcgtgctgtgctacatttgcatgcgcataattatacatattagttagtgtg-ttgcatttgtttggttagaaattgacttaccctgatgcataacttacaca-----gcttaactgtttcagATAATAAATGTGTATAATCAAGAATACGAGAGTGCAGCAGCATTTTGGCCAAGTGTTCATGGACGCATAATCACAGCGTTGATTGTATCACAGCTGCTTC

upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G021194_T01 (Zea mays), 3'ss of exon 10
gtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtcccctatttttgttgccatatatataaggtgaagacacctactttccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTTCGTGTCATTATTGCACTGATAGTGTCACAGATAGTTC
  |  |  ||      |||    |||||     || |  || |   || |||  ||  ||     |||    |  ||  ||  ||||  |  | |      |||  |  || ||||| || ||||| ||||||||||| ||||||||||  |||||||| |||||   ||| |||   ||  | || |  ||  |||| || |||||| |  |||
--aactaaaacgaaacagaggagtatta-----gttagtgtgt---tgcatttgtttggttagaaattgacttaccctgatgcataacttacaca-----gcttaactgtttcagATAATAAATGTGTATAATCAAGAATACGAGAGTGCAGCAGCATTTTGGCCAAGTGTTCATGGACGCATAATCACAGCGTTGATTGTATCACAGCTGCTTC

upper sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 3'ss of exon 9
gtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtcccctattttt-gttgccatatatataaggtgaagacacctactttccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTTCGTGTCATTATTGCACTGATAGTGTCACAGATAGTTC
              | ||||       |||    ||| | ||    | |  | ||         ||||||  |||| |   || ||        ||    |  |||   | ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||   ||| | |||  |||||| ||  | |||||| |  |||
-------------atcagaaaacccccata---atcagattaattatttgctgttatgcctttttattttcagttgtctagtaaattttaccttgaggtattttttgataatgcagATCATTAATGTTTACAATCAAGAGTATGAGAGTGGTGCAGCATTCTGGCCGGATGTTCATGGGCGTATTATTGGTGCACTAATCATCTCACAGCTGCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240510|gb|BG359819.1|BG359819
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctatttttgttgccatatatataaggtgaagacacctactttccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCTGATGTCCATTTTCGTGTCATTATTGCACTGATAGTGTCACAGATAGTTC
                                     cctactttcc  CT-rich tract
                 atatatataa  TA-rich tract