1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagtcccaaagatattttagttccttgaatctttggtcgtttatttaaatagtttaatatattttgtaaaattttcattttattatttgttccttcctcccttcagTGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGGTCATCATGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATG
species | Glycine max |
transcript | GLYMA07G39240.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGGACTCGTGGTGTTGA TGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGGEST: gi|207837016|gb|GD807121.1|GD807121
genomic: ATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGGACTCGTGGTGTTGAgtgagtccca ... ctcccttcagTGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGG
EST: ATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGGACTCGTGGTGTTGA TGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGG
genomic: ATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGGACTCGTGGTGTTGAgtgagtccca ... ctcccttcagTGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGG
gtttaatatattttgtaaaattttcattttattatttgttccttcctcccttcagTGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGGTCATCATGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATG
gtttaat putative branch site (score: 4)
ttttcattttattatt putative PPT
atatattttgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcccaaagatattttagttccttgaatctttggtcgtttatttaaatagtttaatatattttgtaaaattttcattttattatttgttccttcctcccttcagTGTGGGGATCAAGAGTGTTGTGGATGAGAATGAAAGAAAATCATCGGGTGGTCATCATGGTGCTGCTTGTCCTGCGTGTGAGATGGCTGTTGTTTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT