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gtagaatcattatattttattttattttaattattcaacttgggcattgtcccattgcaactctgaattaacccacactattatgatacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGCTCCACATATTCGCCATGTTGTAGCAGATGTAAGATGCAGACAGATCCA
species | Glycine max |
transcript | GLYMA07G39030.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAG GTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGEST: gi|51337411|gb|CO981277.1|CO981277
genomic: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAGgtagaatcat ... atacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATG
EST: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAG GTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGEST: gi|9901319|gb|BE610287.1|BE610287
genomic: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAGgtagaatcat ... atacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATG
EST: TCAAAATCAATATATGACATTGCTAGATCTGAAG GTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGEST: gi|15288181|gb|BI472072.1|BI472072
genomic: TCAAAATCAATATATGACATTGCTAGATCTGAAGgtagaatcat ... atacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATG
EST: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAG GTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATG
genomic: ATGGATTGATCATGTATCAAAATCAATATATGACATTGCTAGATCTGAAGgtagaatcat ... atacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATG
tgggcattgtcccattgcaactctgaattaacccacactattatgatacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGCTCCACATATTCGCCATGTTGTAGCAGATGTAAGATGCAGACAGATCCA
aattaac putative branch site (score: 2)
tattatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaatcattatattttattttattttaattattcaacttgggcattgtcccattgcaactctgaattaacccacactattatgatacccacagGTTATACTTGGGAGGTTTCTATAGAACATGTTGAGAGGGTAAAATGGTATGCTCCACATATTCGCCATGTTGTAGCAGATGTAAGATGCAGACAGATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG