Sequence
atgc intronic sequence ATGC exonic sequencegtaagagatttttagatgaaattaaaccgccttgaaactactttcttaggtgtgaaattaacattttgacaatttgtcttcattattagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
Basic information
species | Glycine max |
transcript | GLYMA07G38160.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 11
gtaagagatttttagatgaaattaa--acc------gccttg---aaactactttcttaggtgtgaaattaacattttg-acaatttgtcttcattat-tagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
|| | | | | | | | || ||| | |||| | | ||| || | ||| | | ||| | | || || | || || || || | |||| |||||| | ||| | | |||| | | |||| |||||||| |||||||| ||||||||||| ||||||||||| | |
--aacacaggctcacacaacagcaactaccttgcatgtcttgcccatgttttttttttctgaacataataactaatttatatcagttttccttatgatgcagTCCTAAAAAACCAATTGCTTTAAGTGCAACTATATTGGGCTTGGTTATGGTTGGAAGAGCAGCATTTGTATTCCCTTTGTCTTTCTTATCCAATCTAAGT
upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 11
-gtaagagatttt--tagatgaaattaaaccgc----cttgaaactactttcttaggtgtgaaattaacattttgacaatttgtcttcattat----tagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
| | || | | || | | || | || || | | |||| | || | | |||||| | ||| || || | ||| |||||| | ||| | | | |||| | | |||| |||||||| |||||||| ||||||||||| |||||||||||| |
agcatcagctcccagtggacgtcgtctgtccttactttctataatgacctcccccacccaaaaataataataatatctatttgtttctcctatgatgcagTCCTAAGAAACCAATTGCTTTAAGTGCAATTATTTTGGGCTTGGTTATGGTTGGAAGAGCGGCATTTGTATTCCCTTTGTCGTTCTTATCCAACCTAAGC
upper sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 8
----------gtaag-agatttttagatgaaattaaaccgc-cttgaaactactttcttaggtgtgaaattaacattttgacaatt---tgtcttcattattagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
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gttcatatatgcatgcactttttcacatgtagttgttcggtacctaactttagtatataactttctgtttgcaaaggctgaaatttccttgttcccgttttcagCCCCGGTAAATCCATCGGCATAAGCTCGATTTTGCTAGGGTTGGTTCTGGTGGGGAGAGCTGCATTTGTTTTCCCATTGTCGTTTTTGTCCAACCTGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaactactttcttaggtgtgaaattaacattttgacaatttgtcttcattattagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
tttgtcttc CT-rich tract
aaattaacattttgac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagagatttttagatgaaattaaaccgccttgaaactactttcttaggtgtgaaattaacattttgacaatttgtcttcattattagCCCAAGAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCTTGGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC