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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatttcctctgattggttgttctttataatgcacactttttatgaatttgcggtattcacttatcttatggtgattcaagGTATTTGGTGAGTCAGGGTTGCGTAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATT

Basic information

species Glycine max
transcript GLYMA07G37180.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
gtatgtgatttc---ctctgattggttgttctttat--------aatgcacactttttatgaatttgcggtattcactta------tcttatggtgattcaagGTATTTGGTGAGTCAGGGTTGCGTAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATT
|||||| || |      |||    |||  |  ||||        ||  | | ||||| |   |  |    | ||   ||       | |  |||||||  | ||||  |||||||||| || ||| |||||||  | ||||| || ||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || 
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatata-gGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgcacactttttatgaatttgcggtattcacttatcttatggtgattcaagGTATTTGGTGAGTCAGGGTTGCGTAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATT
         actttttatgaattt  TA-rich tract