1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtcttttggatctatcttatgtagctatgcatctgtgctgtttgttttcaatgtaattctcattaacattttcatattgcttaaaagttagtagttcatagcttctagaagtaattcttttgtaagtgatctaaaggtttcttttatattcactgctcaattattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG
species | Glycine max |
transcript | GLYMA07G36610.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAG CGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCAEST: gi|151408720|gb|EV278528.1|EV278528
genomic: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAGgtgagtcttt ... ttattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCA
EST: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAG CGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCAEST: gi|31467576|gb|CD409604.1|CD409604
genomic: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAGgtgagtcttt ... ttattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCA
EST: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAG CGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCA
genomic: GAAGCCAAGAGGGTACATGCTTTCAAGGATGTTGTATCCTCAACTCTAAGgtgagtcttt ... ttattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCA
tcttttgtaagtgatctaaaggtttcttttatattcactgctcaattattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG
atctaaa putative branch site (score: 3)
ttattttc putative PPT
tttcttttatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttttggatctatcttatgtagctatgcatctgtgctgtttgttttcaatgtaattctcattaacattttcatattgcttaaaagttagtagttcatagcttctagaagtaattcttttgtaagtgatctaaaggtttcttttatattcactgctcaattattttcagCGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG