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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgccatgtgctaattctatattctatatattggcagtctgcatcagcaacatgtcttgttagttcttctacacacttttgttgatcttaacaatggccagATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAG

Basic information

species Glycine max
transcript GLYMA07G34890.1
intron # 10
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692912|gb|AW761011.1|AW761011
EST:     TTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCA                         ATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCT
genomic: TTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCAgtatcctttt ... caatggccagATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCT
EST: gi|151399172|gb|EV269043.1|EV269043
EST:     TTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCA                         ATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCT
genomic: TTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCAgtatcctttt ... caatggccagATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacatgtcttgttagttcttctacacacttttgttgatcttaacaatggccagATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAG
                                     gatcttaac  putative branch site 
                                         ttaacaat  TA-rich tract