1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tggaatcttgttggaattatgttaataattttctataattgagggttttcttttggttgttgagaaacttattcgcatgcattattttatttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGACTCACGCCAAATGCTTCCTTCTATTGTTC
species | Glycine max |
transcript | GLYMA07G32480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG CTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCAEST: gi|26058897|gb|CA801811.1|CA801811
genomic: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAGgtattacttc ... ttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCA
EST: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG CTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCAEST: gi|58016932|gb|CX703674.1|CX703674
genomic: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAGgtattacttc ... ttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCA
EST: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG CTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCA
genomic: ACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAGgtattacttc ... ttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCA
ttttcttttggttgttgagaaacttattcgcatgcattattttatttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGACTCACGCCAAATGCTTCCTTCTATTGTTC
ttattttatttctt CT-rich tract
attattttatttcttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaatcttgttggaattatgttaataattttctataattgagggttttcttttggttgttgagaaacttattcgcatgcattattttatttcttgtcagCTTCCTGGAGAACGGAAGGTAGATTTACTCAGAAGCCTTGCAGAATTTTCACCTTATACAACACCACAAGACTCACGCCAAATGCTTCCTTCTATTGTTC
- - - cttgttg
- - - - - - - - - - - - - - - - - - - ttgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca