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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtatcacatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA

Basic information

species Glycine max
transcript GLYMA07G30360.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 8
gtctgtatcacatatttcaagaaagatttttatccaaaaaaataaaatgtgtcca---aactcatt-tttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
           || || |     | ||| | |   | |     | | | ||| ||   ||||  |  |||| |||    ||  || | || | |   ||     ||| ||||||||||  ||||||| |||||||| |||||||| || ||  | || || || |||||||| |||||  |||| |||||  ||||||||||||| |
---------gtatgttaccttctacattctgaaatacatgctcatattttgttcaataaacttttggtttggtatacaataaacattgaattatcattctcg--cagTTTGTTGCAGAGTCAAGGAGTTCAGAGGCATTTGTTGCGCTCTGTCTTCTTACAGTCGCAGGGACATCACTTATCACCCAGAAGCTGGGATTTAGTGATA

upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 10
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------gtctg-tatcacatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatat-gtgct-aggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
                       || ||  |  ||   || |    ||        |   | | | | ||    |  ||   |  | |||| |   ||||| |   | |||          | ||||||||||||||||| ||||| |||||||| |||||||| || |||||| | || || ||||| ||||||||||| || || ||     | || || || || |
gtaacttatttcgtgtccttatagtttgacaaaaccctttcctttgaatcccccctttttagagagtgaatacaggacactgttttatttggtgcagtgcttaaatactaagcccaaaacaatattcagGTTGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATA

upper sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 9
gtctgtatcacatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
|| || ||||| | ||| ||  ||      |  ||||    ||    |   |||        |   || ||    || |   |    ||||| ||| || ||||||||||||||  ||||||| || || |||||||||||||||||||| ||||| ||||| ||||||||||| || || ||||| ||||| || |||||||
gtatgcatcacttttttgaaccaaacgagct--ccaactgcatgttttacatcc--------tgcagaaataaattaaggttt----tgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
              ttttgat  putative branch site (score: 4)
            atttttgatat  TA-rich tract