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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctaatcgccctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctaccaaatatgtaaattatttggccaactgaaaaaatacttatctattattttcatgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG

Basic information

species Glycine max
transcript GLYMA07G30150.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 3'ss of exon 11
gtaggtctaatcgc-cctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctacc-aaatatgtaaattatttggccaactgaaaaaatacttat--ctattattttcatgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG
|||||| ||       | || |           |   |  |   || |  |||    |||||| |||||  | |   | | | | | || |   || |     |  | ||  | |  || | ||| |||| |   ||||| ||||||||||| |||||  | ||||| ||||||||  |||| ||||| || |||||||| |||||||| || |  |||||| || | |||
gtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatagGTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAG

upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 11
gtaggtctaatcgccctcttattg------cacacacacccctgatattttcttagttga------aac--cacattcttatcctacca---aatatgtaaatta----tttgg------ccaactgaaaaaatacttatctattattttca--tgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG
||| |||| || |  ||||| ||       |  |    | |    ||  || | | || |      |||  || ||| || | | |  |   |  |||  | ||     ||| |      | | || || | ||| |||    | |     |  | |  | |||| || |||||||| |||||  | ||||| ||| ||||  | || |||||||| |||||||||||||| || ||||||||||||||| | |||
gtatgtcttatagggctcttgttttttcttcctaagttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcagGTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326358|gb|FK015890.1|FK015890
EST:     CAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAA                         GTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA
genomic: CAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAAgtaggtctaa ... atgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA
EST: gi|7146674|gb|AW508596.1|AW508596
EST:     CAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAA                         GTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA
genomic: CAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAAgtaggtctaa ... atgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaattatttggccaactgaaaaaatacttatctattattttcatgttattagGTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAG
                                        ttttcat  CT-rich tract
                   tgaaaaaatacttatc  TA-rich tract