1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacactcttttgctttcttttgtaagttgttctttttttttttctttctgatttctccctcttaatttgggatgactaacagagtctctcatttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTATTACGGTGGTGCTTGGGAGTAATCTTTCATAGGCATCATTCTTCTACCC
species | Glycine max |
transcript | GLYMA07G26540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAG AAACGTGACACGGGGTGGATTAACACGCAGCACCCAAEST: gi|6747727|gb|AW318183.1|AW318183
genomic: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAA
EST: AATGTAAAGGGCCCTGTAAACAGTGCTCANCAACAGCTAATNTCTGGAAG AAACGTGACACGGGGTGGATTAACACGCAGCACCCAAEST: gi|7795653|gb|AW781050.1|AW781050
genomic: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAA
EST: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAG AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTAEST: gi|207685209|gb|GD668555.1|GD668555
genomic: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
EST: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAG AAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
genomic: AATGTAAAGGGCCCTGTAAACAGTGCTCAGCAACAGCTAATTTCTGGAAGgtaattgtta ... atttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTA
ttctgatttctccctcttaatttgggatgactaacagagtctctcatttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTATTACGGTGGTGCTTGGGAGTAATCTTTCATAGGCATCATTCTTCTACCC
gactaac putative branch site (score: 1)
tctctcattt putative PPT
tcttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacactcttttgctttcttttgtaagttgttctttttttttttctttctgatttctccctcttaatttgggatgactaacagagtctctcatttgcacagAAACGTGACACGGGGTGGATTAACACGCAGCACCCAATGACAGTTAGTCTATTACGGTGGTGCTTGGGAGTAATCTTTCATAGGCATCATTCTTCTACCC
tacactc
- - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca