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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaattgtgctgacagatttatcatttttctctccatttttggtagtttgttatcccttttgtatcttataatgtgatcatatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaataaaattgtgctgacagatttatcatttttctctccatttttggtagtttgttatc-ccttttgtatcttataatgtgatcatatc----tctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
       |||    || || | |||     || | |  | |||||     ||   | ||  |||| | |   ||      ||  ||||||    | |  ||| |||||||  ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || ||
-----gtaatccatctaaccggtttcaacattatttggctattttccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcagATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAG

upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 10
gtaat-aaaattgtgctgacagatttatcatttttctctccatttttggtagtttgttatcccttttgtatcttataatgtgatca-tatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
||||| |||||| || ||      ||  ||||||  | |   |  |||||  || || |||  ||    ||    || ||     | | ||| |||||||||||| |  ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||
gtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcatt-gtcatcttttggtgattgcttactgaaccaactttctttggcagGTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337760|gb|CO981626.1|CO981626
EST:     GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAA                         GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
genomic: GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAAgtaataaaat ... tctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
EST: gi|15814514|gb|BI786789.1|BI786789
EST:     CTAGTATTCATTACTATACATCCCATGAA                         GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
genomic: CTAGTATTCATTACTATACATCCCATGAAgtaataaaat ... tctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
EST: gi|254348009|gb|GR854258.1|GR854258
EST:     GCCATGATGC-TGGACTGAGACTAGTATTCATTACTATACATCCCATGAA                         GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
genomic: GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAAgtaataaaat ... tctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
EST: gi|51335080|gb|CO978946.1|CO978946
EST:     GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAA                         GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT
genomic: GCCATGATGCTTGGACTGAGACTAGTATTCATTACTATACATCCCATGAAgtaataaaat ... tctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtagtttgttatcccttttgtatcttataatgtgatcatatctctggcagGTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG
                                           tatctct  CT-rich tract
                    ttttgtatcttataat  TA-rich tract