Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatttgcctaacatgtaattgatgtgaattgattatgaattcacatgaaacttttctgatacagGAAATATCAGGGTATATTGTCGACTTAGACCATTTCTTACTGGACAAGAGGAAAAAACAATCTATTGTGGAACACATTGGTGAAACTGACTTGGTTGTGG

Basic information

species Glycine max
transcript GLYMA07G10190.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10190.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G124883_T01 (Zea mays), 3'ss of exon 3
----------------------gtttatttgcctaacatgtaattgatgtgaattgattatgaattcacatgaaacttttctgatacagGAAATATCAGGGTATATTGTCGACTTAGACCATTTCTTACTGGACAAGAGGAAAAAACAATCTATTGTGGAACACATTGGTGAAACTGACTTGGTTGTGG-
                       |  | |||    |||| | || | |||  |    |      | |||   ||  ||| ||    |||| ||||||||||| ||||||||  | |||||||||||| |||| ||||| | |||||||| | ||| | ||  | |||||||||| ||    | || |   
gtatgttcctgcaatgataagcttacacttggagcacattttatggctgtttaacattctcatttccactctaatgtttgctat--cagGCAATATCAGGGTTTATTGTCGTGTCAGACCATTTCTTCCTGGTCAAGATGGAAAAACAACC-ATTATTGATTATATTGGTGAAAATGGTGAGATTCTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgtaattgatgtgaattgattatgaattcacatgaaacttttctgatacagGAAATATCAGGGTATATTGTCGACTTAGACCATTTCTTACTGGACAAGAGGAAAAAACAATCTATTGTGGAACACATTGGTGAAACTGACTTGGTTGTGG
                                         cttttct  CT-rich tract
                 aattgattatgaatt  TA-rich tract