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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgtgcattccttactccttttgtgtgtcttcatttgagccagtgctcatagcatgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT

Basic information

species Glycine max
transcript GLYMA07G10000.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10000.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 3'ss of exon 12
-------------------------------gtaaaattgtgcattccttactcc---ttttgtgtgtcttcattt--gagccagtgctcatagcatg---------tcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT
                               | || ||    | |||| | | ||   |||| | | ||||| |||   |||  |  ||  | || ||         | |  |||||||||||| || || |||||||| ||||| ||||||||||| || |  || || || || ||||||
gtgaagttgttgagttctcaagcttggttttggaagatgtctctttccctcccccaccttttttttttcttcttttcaaagcttggactgctggcctgaaagttaaatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCCTATAGTGGACCAGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207814742|gb|GD788987.1|GD788987
EST:     ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAG                         GGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
genomic: ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
EST: gi|193512327|gb|FK468209.1|FK468209
EST:     AAAACTGCTCCCTCTGGTCATTAATGCATCAAAAGATAG                         GGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
genomic: AAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
EST: gi|21600503|gb|BQ610834.1|BQ610834
EST:     ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAG                         GGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
genomic: ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
EST: gi|57575814|gb|CX548785.1|CX548785
EST:     ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAG                         GGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC
genomic: ATTACTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAGGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttactccttttgtgtgtcttcatttgagccagtgctcatagcatgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT
 tccttac  putative branch site (score: 2)
                    ttcattt  TA-rich tract