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...gagggaaattccttttttgttatggtgtttgaattgcttttgagtaaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT
species | Glycine max |
transcript | GLYMA07G09270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|192327720|gb|FK021355.1|FK021355
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|19346368|gb|BM891248.1|BM891248
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|8284412|gb|BE021971.1|BE021971
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|21256350|gb|BQ453238.1|BQ453238
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: ACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|151399677|gb|EV269548.1|EV269548
genomic: ACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|58017137|gb|CX703879.1|CX703879
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACEST: gi|8284214|gb|BE021773.1|BE021773
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
EST: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG GCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
genomic: TGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATGgtaaattatg ... tactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAAC
aaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT
tcttaat putative branch site (score: 3)
tttgttttatttttt putative PPT
tttgttttatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagggaaattccttttttgttatggtgtttgaattgcttttgagtaaaagaaactttgctcttaataaggaagttgtttgttttattttttactgtatagGCAATAGCAATGATCCTTCAAGCCACAGGAGCAACTTCACTTGTATCAAACATGGGAGCTCAGTACTTTTCTGTTGGTGGCATGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
gagggaa
- - - - - - - - -tgttatg
- - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - aaagaaa