1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaattcaatgttttttctccctataactcaaaataaactgtttctataccttgattaatgtaagagttagcacaaataatgttcattcctctccaaacagGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGATCTAGAAATACAAACTGAAAAGGAGATTGAATTGAGGC
species | Glycine max |
transcript | GLYMA07G09070.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTAATTCTTGAG GTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTAEST: gi|27808987|gb|CB063409.1|CB063409
genomic: AATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTAATTCTTGAGgttttaccca ... ctccaaacagGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTA
EST: AATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTAATTCTTGAG GTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTA
genomic: AATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTAATTCTTGAGgttttaccca ... ctccaaacagGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTA
ataccttgattaatgtaagagttagcacaaataatgttcattcctctccaaacagGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGATCTAGAAATACAAACTGAAAAGGAGATTGAATTGAGGC
gattaat putative branch site (score: 3)
tgttcattcctctcc putative PPT
aaataatgttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattcaatgttttttctccctataactcaaaataaactgtttctataccttgattaatgtaagagttagcacaaataatgttcattcctctccaaacagGTTCTTGATAAAGACATTGGACAAGATAAGCGATTGGGAATAGCACAGTTACCCCTTATTGATCTAGAAATACAAACTGAAAAGGAGATTGAATTGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - -caatgtt
- - - - - - - ttctccc
- - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - -ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaaa