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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaacacccctggatctctcatattaagctgttctgtttgatgttttacttggcttctaatgctagtgtagtcattaagagttcattgttctatatacagTTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTCATAAGTGACATGCCTCAGGAATCTCTGAACGATGCAA

Basic information

species Glycine max
transcript GLYMA07G07850.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07850.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 10
gcaacacccctggatctctcatattaagctgttctg--tttgatgttttacttggcttctaatgctagt-gtagtcat--taagagttcattgttctatatacagTTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTCATAAGTGACATGCCTCAGGAATCTCTGAACGATGCAA
    |    ||   |      | | ||   |||||    |   |   |   |||||| | | |   | |   | |  |  | |  |||  || |   || | |||||||| |||| |||||| |||||||||||||| || | |||||| || || |||||||||||||| |||||||||||||| ||| |||| ||||||||||
----cttttctaagtggaa-gtgtgaattagttcttgcctctctccctagtttggctacaagtagcatttagaattgtgctgatggtttcttctctgatttgcagTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTGTGCACGCCGTAGCTTGTGTTATCTCATGAGTGACATGCCTCAAGAAGCTCTCAACGATGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990503|gb|BI316176.1|BI316176
EST:     TTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagattagt ... ctatatacagTTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttggcttctaatgctagtgtagtcattaagagttcattgttctatatacagTTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGTTTGTGTTATCTCATAAGTGACATGCCTCAGGAATCTCTGAACGATGCAA
         ttctaat  putative branch site (score: 2)
                                        ttgttct  putative PPT
                                           ttctatata  TA-rich tract