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...ctcattccattggcctgccctgtcctggattcttatcatgctacagattgcatgtgaaataaaaatataaattcttatatttagttgttaatatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGG
species | Glycine max |
transcript | GLYMA07G03890.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGATAGTGGCATTTTGGAGAAAAGATCTCAGTAAG GTTAATCCAAAAGCTGCTGAATCATTGGCTGATCTTGAGGAATATCCTAATEST: gi|58016785|gb|CX703527.1|CX703527
genomic: TCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGgtaatttgtt ... atatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAAT
EST: CAAGCAAGGTCTCAGAGATAGTGGCAA-TTGGAGAAAAGATCTCAGTAAG GTT-ATCCAAAAGCTGCTGAATCATTGGCTGATCNTGAGGAATATCCTAATEST: gi|10231240|gb|BE800056.1|BE800056
genomic: CAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGgtaatttgtt ... atatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAAT
EST: CAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAG GTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATEST: gi|298182438|gb|HO026613.1|HO026613
genomic: CAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGgtaatttgtt ... atatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAAT
EST: CAAGCAAGGTCTCGGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAG GTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCCGAGGAATATCCTAAT
genomic: CAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGgtaatttgtt ... atatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAAT
gattgcatgtgaaataaaaatataaattcttatatttagttgttaatatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGG
tgttaat putative branch site (score: 3)
aaataaaaatataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcattccattggcctgccctgtcctggattcttatcatgctacagattgcatgtgaaataaaaatataaattcttatatttagttgttaatatgcacagGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- cattcca
- - - - - - -cctgccc
- - - - - - - - - - - tcctgga
- - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa