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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaactttagtttaagtcctttaactttgcagggaatcatatatgtattttaatttttactacttttcttattaaattgataatgatatttttagatgaatcttatgttattatgttaatgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACCGTTGGCAAACCATTTCCTGGTATACAG

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937440|gb|BQ081291.1|BQ081291
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|254347505|gb|GR853754.1|GR853754
EST:     GCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|162286164|gb|FC456612.1|FC456612
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|17153356|gb|BM143289.1|BM143289
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|151393469|gb|EV263344.1|EV263344
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|254321454|gb|GR824771.1|GR824771
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
EST: gi|9205100|gb|BE331324.1|BE331324
EST:     GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAA                         TTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC
genomic: GGGAAGCCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAAgtaagcaaac ... atgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgataatgatatttttagatgaatcttatgttattatgttaatgcttctagTTTGTTATGGCATTGTCGAATCCATTGAAAGGTGAGCGCAAGCCTGGAACCGTTGGCAAACCATTTCCTGGTATACAG
                                        tgttaat  putative branch site (score: 3)
                                              tgcttct  CT-rich tract
      ataatgatatttttag  TA-rich tract