Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatattctactaaaggggtgtgtttttgtttaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAACTCATCCCCT

Basic information

species Glycine max
transcript GLYMA07G01950.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
gttaatatattctactaaaggggtgtgtttttgtttaaattct--ttgcaaataaatttagaatctcacat-ctattttatg--ttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAACTCATCCCCT
                    || ||  |||||  | |  |  |  | ||    | ||||    | ||| || ||| | ||||  || |  ||| ||||| |||||||| |||||||||||||||||||| || ||| ||| ||| || ||||||||  | ||||| ||||| || || ||||||||||| |||
------------------gtggttgcatttttagtcatttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398017|gb|EV267895.1|EV267895
EST:     TGGGGTAGGAGACCAGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCG                         GGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGAT
genomic: TGGGGTAGGAGACCAGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCGgttaatatat ... gttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGAT
EST: gi|37997336|gb|CF808925.1|CF808925
EST:     TGGGGTAGGAGACCAGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCG                         GGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGAT
genomic: TGGGGTAGGAGACCAGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCGgttaatatat ... gttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAACTCATCCCCT
                           atctcac  putative branch site (score: 3)
              aaataaatttagaatc  TA-rich tract