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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatattctactaaaggggtgtgattttgttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCT

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
gttaatatattctactaaaggggtgtgattttgttcaaattct--ttgcaaataaatttagaatctcacat-ctattttatg--ttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCT
                    || ||   ||||  |||  |  |  | ||    | ||||    | ||| || ||| | ||||  || |  ||| |||||||||||||| |||||||||||||||||||| || ||| |||  || || ||||||||  | ||||| ||||| || || ||||| ||||| |||
------------------gtggttgcatttttagtcatttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268757|gb|BM885013.1|BM885013
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|9985955|gb|BE659961.1|BE659961
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTA-CCAAAGATTGAGCAN                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGANGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|16348853|gb|BI974448.1|BI974448
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|208288057|gb|GE083048.1|GE083048
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|9985954|gb|BE659960.1|BE659960
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|193309826|gb|FK277894.1|FK277894
EST:     TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTGCTGATGAGGGATGGACAACAAT
genomic: TGGGGTAGACGACCGGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
EST: gi|308098371|gb|HO760112.1|HO760112
EST:     CACTACGAGCTCTTAGCCAAAGATTGAGCAG                         GGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT
genomic: CACTACGAGCTCTTAGCCAAAGATTGAGCAGgttaatatat ... gttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCT
                           atctcac  putative branch site (score: 3)
              aaataaatttagaatc  TA-rich tract