Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactcgaatacttttttcttttcctttttcacaatttgcatgtgtttcacatctatctaccaacctaacaattgtaattcattaaattgagatggcttatataatatcattgagatatataataacgatagtatcaagttatgatgagaagtatttatgattactttcttgcctattccaatttttagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTAATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 8
----gtatactcgaat---acttttttcttttcctttttcacaatttgcatgtgtttcacatctatctaccaacctaacaattgtaattcattaaattgagatggcttatataatatcattgagatatataataacgatagtatcaagttatgatgag--aagtatttatgattacttt---cttgcctattccaatttt-tagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTAATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC
        | | ||||   |  |  ||| || | |||  ||   |||| |  || |  |     ||  |  |  ||        |   |||  |        | |  || | ||| || || |  |    |  ||| | |  | | |   |   | |   || |  |   |  |  |||   |||   | | ||||||||  |||||||||||| || |  || ||||||||||||||||||||||||| |||||| | |||||| | ||| ||||||| |||||||| ||||| || || |||
gtaacctcagttgaatcagaactaattcattacttttcacagcctttgtagttgatgtagg---atggataagtct--tggcccttggtcacgatgcatgtcttgggtacaaaatttccttcattttctcatcaaccaaacaacccaaaaagtttaaatcaaatcctagcgtgtgatttgaacttatgtgtaccaattttgcagGTTCTTCAAGGAACTACTGGTGGTGTTTCTGATCCAACAAATGGCTGCTGGGCTTTTTAGGCTCATTGCTGGAGTCTGCAGGACTATGATCATTGCCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagttatgatgagaagtatttatgattactttcttgcctattccaatttttagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTAATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC
                              ctttcttgcctattcc  CT-rich tract
                  tatttatgattacttt  TA-rich tract