1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgaacttaaaacaccctaataagacaatgattttttaattgtagatattctccttaattcatctttttcccccaaccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACGAAATGGCAGAG
species | Glycine max |
transcript | GLYMA07G00430.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAG TATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACEST: gi|192311315|gb|FK003450.1|FK003450
genomic: GTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGgtgaacttaa ... ccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAAC
EST: CTGGTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAG TATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACEST: gi|192311314|gb|FK003449.1|FK003449
genomic: CTGGTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGgtgaacttaa ... ccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAAC
EST: CTGGTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAG TATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAAC
genomic: CTGGTGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGgtgaacttaa ... ccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAAC
ttttttaattgtagatattctccttaattcatctttttcccccaaccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACGAAATGGCAGAG
tctttttcccccaacc CT-rich tract
ttaattcatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacttaaaacaccctaataagacaatgattttttaattgtagatattctccttaattcatctttttcccccaaccacttgcagTATTCCAATTCTGATGCTGTTGTATATGTCGGCTGTGGGGAACGTGGAAACGAAATGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT