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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGATTATACGATTCAGTCAATGTCTTGTTGTCGCTTCAG

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238321|gb|BE807137.1|BE807137
EST:     ATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCACAAGGTTTAAAG                         TGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGATAAAATGAT
genomic: ATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaaca ... tgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAA-GAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGATTATACGATTCAGTCAATGTCTTGTTGTCGCTTCAG
                                 aactaaa  putative branch site (score: 2)
                                         tttttgt  CT-rich tract
         atcacaacaaatatat  TA-rich tract