1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttttttgtagatcagtaatatgccaaatacatttgttattttcttattccgcttctactcaaactaatatggttgtaccctctgttatgttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
species | Glycine max |
transcript | GLYMA06G45160.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTTAGCTGCAGTTACTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|31474417|gb|CD416445.1|CD416445
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|209724206|gb|BW658112.1|BW658112
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|22928614|gb|BU545753.1|BU545753
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|9899156|gb|BE608183.1|BE608183
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|193318264|gb|FK285828.1|FK285828
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|192320764|gb|FK013854.1|FK013854
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATTTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|209700002|gb|BW661218.1|BW661218
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|254347258|gb|GR853507.1|GR853507
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: GCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|21887940|gb|BQ741153.1|BQ741153
genomic: GCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|209723674|gb|BW662569.1|BW662569
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|15284739|gb|BI468630.1|BI468630
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGGEST: gi|31459116|gb|CD401144.1|CD401144
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
EST: ATTTTAGCTGCAGTTGCTCCACCAATNATCTTCAAAGGAAAATCTCTCAC AGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
genomic: ATTTTAGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACgtgagtgtcc ... ttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
tattccgcttctactcaaactaatatggttgtaccctctgttatgttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
aactaat putative branch site (score: 2)
aaactaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttgtagatcagtaatatgccaaatacatttgttattttcttattccgcttctactcaaactaatatggttgtaccctctgttatgttgtggacagAGGCATTTTGGCTGCGATTGATGTGTTGGGAGACAATGCATTGGTTGGG
- - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg