Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaggatgagccatgatacctaccttcacttatcccctttaaataaaaggaaaacatacacaggaagaagttttgcttatattaaccttgctgtgatattatatctatattccttatggcatgttttttttatttagttaactcaattggcataattttcaccaatggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGG

Basic information

species Glycine max
transcript GLYMA06G42840.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42840.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 3'ss of exon 10
gtgagtaggatgagccatgatacctaccttcacttatcccctttaaataaaaggaaaacatacacaggaagaagttttgcttatatt-aaccttgctgtgatattatatctatattccttatggcatgttttttttatttagttaactcaattggcataattttcaccaatggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGG
                                                                                | || || |  | |  |    | | ||  | |||  ||  ||| ||  ||  | ||  ||  ||  | | ||  || ||   ||||    ||  | |  ||||  ||||| || ||||||||||||||||||||||||||||| || ||||| ||||| ||  | || || || | |||| | || ||||| |||||||||||||| |
--------------------------------------------------------------------------------tcatgtttagtcgttattcagtgtaattgcaatag-ccagatgacaacttaatattgattttttttc-cgatgtgctta---ttcatt--tgaatatctttatg-cagCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACG

upper sequence: GLYMA06G42840.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 10
gtgagtaggatgagccatgatacctaccttcacttatcccctttaaataaaaggaaaacatacacaggaagaagtttt--gcttatattaaccttgctgtgatattatatctatattccttatggcatgttttttttatttagttaactcaattggcataattttcaccaatggcttttattattt-cagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGG
                                                                     |   ||||   ||||||  |    | ||||  | |   |||    ||  || | |     |  |    ||||       ||||   || ||   ||      |||  || ||||| | ||||| || |||||||||||| | |||||||||||||| || ||||| ||||| || || || ||||| | |||| | || || || ||||||||||| || |
---------------------------------------------------------------------aattgtttaaagcttatgct---ttagctggaaaacagtata---atctctaaagcagcatgctggacattt-------tcaaagagcttagcatt------tgg--ttgattatatgcagCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193366898|gb|FK329064.1|FK329064
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|13252791|gb|BG363694.1|BG363694
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|6725990|gb|AW310389.1|AW310389
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|17023095|gb|BM094129.1|BM094129
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193335279|gb|FK297991.1|FK297991
EST:     TACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: TACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193335864|gb|FK299794.1|FK299794
EST:     TACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: TACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193687860|gb|FK628287.1|FK628287
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAG
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAG
EST: gi|8401865|gb|BE057499.1|BE057499
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|208078317|gb|GD877529.1|GD877529
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         G
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcag-
EST: gi|208078317|gb|GD877529.1|GD877529
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         G
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcag-
EST: gi|9819612|gb|BE555125.1|BE555125
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTTGAAGCATGTGCACATTCTTTCTTTGATGAGCTTCGCGAGCCATATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|13240209|gb|BG359518.1|BG359518
EST:     ACCTTGCAT-AAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193413366|gb|FK377363.1|FK377363
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCG
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCG
EST: gi|207704930|gb|GD685563.1|GD685563
EST:     AGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATG
genomic: AGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATG
EST: gi|193317277|gb|FK281537.1|FK281537
EST:     CATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGTATGTGCACATCCCTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: CATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193364520|gb|FK333561.1|FK333561
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|13562800|gb|BG551020.1|BG551020
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193299959|gb|FK268442.1|FK268442
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|193376679|gb|FK340874.1|FK340874
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
EST: gi|9258830|gb|BE346977.1|BE346977
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTACGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttagttaactcaattggcataattttcaccaatggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGG
       agttaac  putative branch site (score: 3)
                                        cttttatt  putative PPT
                                         ttttattatttca  TA-rich tract