1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatgtttcactttatctcaatgttgctttttgacaatgcctgtctgaagtaacctatttcatccaaaactttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCT
species | Glycine max |
transcript | GLYMA06G36620.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGG GAACAAAAGAGAGACACGCAGTTACGTTGAAATTTTTGAGTCTCTTGGTGTEST: gi|8285374|gb|BE022933.1|BE022933
genomic: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGgtaatgtttc ... ttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGG GAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTEST: gi|31312347|gb|CD397550.1|CD397550
genomic: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGgtaatgtttc ... ttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGT
EST: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTGGG GAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGT
genomic: CATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGgtaatgtttc ... ttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGT
ctttttgacaatgcctgtctgaagtaacctatttcatccaaaactttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCT
aagtaac putative branch site (score: 2)
ctttttttgc putative PPT
aaaacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttcactttatctcaatgttgctttttgacaatgcctgtctgaagtaacctatttcatccaaaactttttttgcagGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC