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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttcttaatgttgaatttgtttatatttaaaccaagttattttgtaatgtgtttagttattgttacttcaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAG

Basic information

species Glycine max
transcript GLYMA06G30000.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G318635_T01 (Zea mays), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttat-atttaaaccaagttattttgtaatgtgtttagttattgttacttcaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
  || | | |  || ||| |    |  |  | ||      |||||      | |||||||   |    |   |     ||   |||| ||||| ||||| || ||||| || || ||||||||||||||||| || || ||||| ||||| ||||||||| | || |||   ||  | |||||||
-gtaatatatctatcttgcagcaatcaaagacttgttttgagttac-----actgtgttttactgccatccttctgtgttgtcagGTTGCAGACTTTGGCTCACTTGAGCTTTCCCCTGTTGATGGAAGGACATTAACAGATTTTATGCACACTAGGGGCCTCCAGATGCGGTCACTGGGACGAG

upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 10
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttatatttaaaccaagttattttgtaatgtgtttagttattgttacttcaaat-tcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
|| ||||||||  || |   |||  |  | ||||    || |  |      |  |  | |   |||   |||| | || |   |||||||||| ||||| || |||||||||||||| || |||||||| ||  |||| || || ||||| || || ||||||||||||  |||||| ||| |||
gtcagtttctt--tgatctcttttgtcctgtttagggaaaatcctc-----agttcctcataaatttagacttgatatgttgcagGTGGCAGACTTTGGATCTCTTGAACTCTCACCCGTCGATGGAAGAACTCTGACAGACTTTATGCACACCAGAGGCTTGCAAATGCATTCCTTGGGAAGAG

upper sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 12
gttagtttcttaatgttgaatttgtttatatttaaaccaagttattttgtaatgtgtttagttattgttacttcaaattcata---gGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
||| ||| ||||||  | |  || |||   ||    ||  || || || |||    ||||  |||| | | || |  || |||   ||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| || ||||| |||||||||| ||| || || || |
gttggttccttaataatta--ttatttgcttt---gccttgtgatcttttaagacttttaaatatt-tgatttaactttgatattagGTGGCAGATTTTGGCTCCCTTGAACTTTCACCTGTCGATGGAAGGACTTTGACAGATTTTATGCACACCAGGGGTTTGCAAATGTGTTCGTTGGGTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaaaccaagttattttgtaatgtgtttagttattgttacttcaaattcatagGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAG
         aagttattttgtaat  TA-rich tract