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gttagtgaaatgacatcaaagagaagctagagttttgttttattttattttttggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATCCATGTTTACCCGAATGGAAGAGGAAGTTG
species | Glycine max |
transcript | GLYMA06G24520.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193530804|gb|FK487003.1|FK487003
genomic: TGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACA-CTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208248956|gb|GE046385.1|GE046385
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208279004|gb|GE079161.1|GE079161
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193677036|gb|FK618774.1|FK618774
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208067430|gb|GD865294.1|GD865294
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: GAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208064941|gb|GD861639.1|GD861639
genomic: GAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGEST: gi|208132923|gb|GD931626.1|GD931626
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTG
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATEST: gi|193420935|gb|FK387064.1|FK387064
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGAT
EST: TGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTT-CCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|207825604|gb|GD800955.1|GD800955
genomic: TGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193431223|gb|FK398607.1|FK398607
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208095879|gb|GD894163.1|GD894163
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208232383|gb|GE035804.1|GE035804
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|208313827|gb|GE113037.1|GE113037
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: AAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193451568|gb|FK421418.1|FK421418
genomic: AAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: GTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193407245|gb|FK373530.1|FK373530
genomic: GTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193703975|gb|FK645195.1|FK645195
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: CTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|193357852|gb|FK320614.1|FK320614
genomic: CTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAEST: gi|208052876|gb|GD850955.1|GD850955
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAA
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
agttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATCCATGTTTACCCGAATGGAAGAGGAAGTTG
atttgat putative branch site (score: 5)
tattttct CT-rich tract
ttattcatacatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaatgacatcaaagagaagctagagttttgttttattttattttttggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATCCATGTTTACCCGAATGGAAGAGGAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA