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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttctctctctcacacacacacaccatagatatgcttttgatgtatggatgcatatcttagcacattaagaatgcgtaaatatgattttcaaatgcaatgaattttattctcttttcattatcagatgactgacctgctattgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 10
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgtttctctctctcacacacacacaccatagatatgcttttgatgtatggatgcatatcttagcacattaagaatgcgtaaatatgattttcaaatgcaatgaattttattctcttttcattatcag--atgactgacctgctat-tgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA
                                                                    | |   ||   |   |   || | |   ||  ||    |||| |   ||     |||  |  |||  |    || | | |||  || ||  ||  ||||||||||| || ||||||||  |||||||| | ||||||||| ||||||||||||  || |||||  || | ||  | || || || || 
-------------------------------------------------------------------gtgagccattttttgttgctatctgcttctggcatttgctttaattagttacagatatttgttatgctttcaatgatttatgacattcctgttccacagTTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207811436|gb|GD783483.1|GD783483
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
EST: gi|254338644|gb|GR849955.1|GR849955
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAA
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAA
EST: gi|15662847|gb|BI700218.1|BI700218
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
EST: gi|193669758|gb|FK612358.1|FK612358
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
EST: gi|208271111|gb|GE066619.1|GE066619
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
EST: gi|193518779|gb|FK472752.1|FK472752
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTT
EST: gi|208188811|gb|GD981829.1|GD981829
EST:     GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAG                         TTTGATATCCTATGGGATGCA
genomic: GTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGgtgtttctct ... taatctgcagTTTGATATCCTATGGGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctcttttcattatcagatgactgacctgctattgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCA
                                          ttctaat  putative branch site (score: 2)
                                        ttttct  CT-rich tract
                                 tattgaattttctaat  TA-rich tract