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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctcaaatctgtcatggaaaatatttattatgattttgaatgctttctgattttactaaatgaagcaatgttgacttcacttaacgtaatttttctttaataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG

Basic information

species Glycine max
transcript GLYMA06G18530.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18530.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
gtttgttctcaa-atctgtcatggaaaatatttattatgattttgaatgctttctga----ttttactaaatgaagcaatgttgacttcacttaacgtaatttttctttaataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG
||||||   ||     ||   |||   ||   ||  | | |||   |   | ||| |    | ||  |   |       |  ||  ||     ||  ||  | | |     |  | ||||||| | |||||||||||||| || ||||| ||||||||||| |||||||| ||||| || || |||||||||||||| |  ||  || | |||||    |
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846474|gb|BF069349.1|BF069349
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAACATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|31464003|gb|CD406031.1|CD406031
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|207829246|gb|GD798922.1|GD798922
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|192330548|gb|FK021251.1|FK021251
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACACTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|6963856|gb|AW432549.1|AW432549
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|31307855|gb|CD393058.1|CD393058
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|214004373|gb|DB985041.1|DB985041
EST:     CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAG                         AACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaatgaagcaatgttgacttcacttaacgtaatttttctttaataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG
                        acttaacgtaattttt  TA-rich tract