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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattctagttaacaaagcaaatattctgtgttttaacatttgtattttacctaattgacattattattgtatacagctagacttgtgatggttttatgcttgtttttctttttgattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTGCGGCACAGACCAATTG

Basic information

species Glycine max
transcript GLYMA06G15350.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
gtataattctagttaacaaagcaaatattctgtgttttaacatttgtattttacctaattgacattattattgtatacagctagacttgtgatggttttatgcttgtttttctttttgattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTGCGGCACAGACCAATTG
|| | ||  |  ||| |  |||| ||||     ||||   | ||||| | ||     |||    ||||||   |||| |   | | |    |||    ||  ||  ||||| |||||  ||  | |||| |||||||| | || ||| |||| ||||||||| ||||||||||||| |||||||| || || | ||||||| ||||||||||||| || ||||| ||||
gtctgatattttttaccttagcacatat-----gtttctgcttttgtttgttc----atttgtgttattagcatataaa---aaaatcagcatg----ta-actcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207824834|gb|GD794670.1|GD794670
EST:     GAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAG                         ATTACTGCACTGGTCACAACAAA
genomic: GAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGgtataattct ... ttaatgacagATTACTGCACTGGTCACAACAAA
EST: gi|207745127|gb|GD714445.1|GD714445
EST:     GAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAG                         ATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTAC
genomic: GAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGgtataattct ... ttaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacagctagacttgtgatggttttatgcttgtttttctttttgattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTGCGGCACAGACCAATTG
                                           gattaat  putative branch site (score: 3)
                                tttttctttttgatt  CT-rich tract
                             ttgtttttctttttga  TA-rich tract