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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctgctgctttgttattgttcattgtcatatagcttttagacattactttaacttatggaaagtctgttgttacgttctgcagtagATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG

Basic information

species Glycine max
transcript GLYMA06G14060.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208308814|gb|GE104608.1|GE104608
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208308814|gb|GE104608.1|GE104608
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208118644|gb|GD917893.1|GD917893
EST:     AGCCACAGCAGAAGTCCCAGCGGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|207736719|gb|GD710344.1|GD710344
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|207736719|gb|GD710344.1|GD710344
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|5677805|gb|AI938935.1|AI938935
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|5677805|gb|AI938935.1|AI938935
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|14011762|gb|BG726684.1|BG726684
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|14011762|gb|BG726684.1|BG726684
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208124774|gb|GD924220.1|GD924220
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|193694513|gb|FK627263.1|FK627263
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193694513|gb|FK627263.1|FK627263
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208214545|gb|GE011980.1|GE011980
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|193430706|gb|FK396424.1|FK396424
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAA-GAGTTAGAAG                         ATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATC
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtagATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATC
EST: gi|207825482|gb|GD800567.1|GD800567
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|207825482|gb|GD800567.1|GD800567
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193532913|gb|FK488519.1|FK488519
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193532913|gb|FK488519.1|FK488519
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|31468970|gb|CD410998.1|CD410998
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|31468970|gb|CD410998.1|CD410998
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|31311171|gb|CD396374.1|CD396374
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|207777615|gb|GD746666.1|GD746666
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|208249117|gb|GE047162.1|GE047162
EST:     TCCAAAAAGAGTTAGAAGTAG                       
genomic: TCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|193440226|gb|FK408571.1|FK408571
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|208176930|gb|GD976001.1|GD976001
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|193529782|gb|FK485687.1|FK485687
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193529782|gb|FK485687.1|FK485687
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|10253540|gb|BE821306.1|BE821306
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|23726789|gb|BU761397.1|BU761397
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|208172876|gb|GD969395.1|GD969395
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208172876|gb|GD969395.1|GD969395
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208167455|gb|GD965121.1|GD965121
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208167455|gb|GD965121.1|GD965121
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193726924|gb|FK660250.1|FK660250
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193726924|gb|FK660250.1|FK660250
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|207781179|gb|GD752274.1|GD752274
EST:     AGAAGTCCTAAAAAGAGTTAGAAGTAG                       
genomic: AGAAGTCC-AAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|193551835|gb|FK506492.1|FK506492
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193551835|gb|FK506492.1|FK506492
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|207749718|gb|GD718098.1|GD718098
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|207749718|gb|GD718098.1|GD718098
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|193630136|gb|FK585305.1|FK585305
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|207682724|gb|GD666355.1|GD666355
EST:     CAAAAAGAGTTAGAAGTAG                       
genomic: CAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|208245893|gb|GE044779.1|GE044779
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|208245893|gb|GE044779.1|GE044779
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|15199933|gb|BI424083.1|BI424083
EST:     AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttttagacattactttaacttatggaaagtctgttgttacgttctgcagtagATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAG
               ctttaac  putative branch site (score: 3)
           attactttaacttat  TA-rich tract