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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcactttttatgtgtgtgtgtgtgcgcgcatgtgcatgcgcatgatctttgattataatttatactttttttttctttatctatactattttcttttacaaacttgtaaaaaactggatttgcagGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGTCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG

Basic information

species Glycine max
transcript GLYMA06G12110.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12110.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 3'ss of exon 10
gttggttcactttttatgtgtgtgtgtgtgcgcgcatgtgcatgcgcatgatctttgattataa-tttatactttttttttctttatctatactattttcttttacaaacttgtaaaaaactggatttgcagGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGTCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG
                                                   | || | ||  || |||  |     |   |   |  |   | | |      ||   || ||     ||   ||  |  |||||||| |||||||| |||||||||||| ||||||| |||||  ||||||| ||  | ||||||||||| ||||| |||
----------------------------------------------gtcagtattggtttccaactttgaatgcactcactaagtggcagaaatttccatcattctgaagttacttcaattggg--tgacagGTGAAACCTGGTCTGCCTTACTTGGATGTCATAAGGCTGCTTCGGGATAACTCGTCATTGCCAATTGCTGCATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193709640|gb|FK642562.1|FK642562
EST:     CGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG                         GTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAAT
genomic: CGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTGgttggttcac ... ggatttgcagGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGTCTGCTCAGGGATAAT
EST: gi|193374738|gb|FK342924.1|FK342924
EST:     TGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG                         GTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAAT
genomic: TGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTGgttggttcac ... ggatttgcagGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGTCTGCTCAGGGATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttatctatactattttcttttacaaacttgtaaaaaactggatttgcagGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGTCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG
     tttatctatactattt  TA-rich tract