1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaccgatatgttacaggattttatgtcatatatactcatccttattttagtagtttccgattgtgatgattgatctaacatttgtttgaatgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGATAAAGCTAGCGGGTCATACCGCTATCTAGGAGGGTATTGGGAGGCCAGAC
species | Glycine max |
transcript | GLYMA06G11470.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAG GCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGATEST: gi|31470844|gb|CD412872.1|CD412872
genomic: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAGgtgcctgtta ... tgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGAT
EST: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAG GCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGATEST: gi|13481481|gb|BG510824.1|BG510824
genomic: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAGgtgcctgtta ... tgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGAT
EST: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAG GCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGAT
genomic: ATGACATGGCCAATGCAGAAAAGTTACGGTTAGAGCAGCGGCAGCGCCAGgtgcctgtta ... tgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGAT
tttagtagtttccgattgtgatgattgatctaacatttgtttgaatgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGATAAAGCTAGCGGGTCATACCGCTATCTAGGAGGGTATTGGGAGGCCAGAC
atctaac putative branch site (score: 2)
taacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccgatatgttacaggattttatgtcatatatactcatccttattttagtagtttccgattgtgatgattgatctaacatttgtttgaatgtggttcagGCTCGGAAGATGCAGGAGAGTGGTTGGAAACCACGGTGGTTTGCAAAGGATAAAGCTAGCGGGTCATACCGCTATCTAGGAGGGTATTGGGAGGCCAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg