1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtttttatattatcttcactttatgtgcttaccatttcttttttatttttgtattatgtacttatttggttgtactggttataagagtgtgatttaatatggatttgtgtttgttttatattaatcaaaaggaataaatagttacacttctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG
species | Glycine max |
transcript | GLYMA06G10180.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAG GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAEST: gi|23064310|gb|BU579092.1|BU579092
genomic: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGgtttttatat ... tctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAA
EST: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAG GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAEST: gi|193488203|gb|FK457076.1|FK457076
genomic: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGgtttttatat ... tctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAA
EST: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAG GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAEST: gi|17400562|gb|BM177344.1|BM177344
genomic: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGgtttttatat ... tctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAA
EST: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAG GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAEST: gi|254324305|gb|GR840622.1|GR840622
genomic: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGgtttttatat ... tctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAA
EST: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAG GCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGA-GCAGA
genomic: TGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGgtttttatat ... tctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGA
tttgtgtttgttttatattaatcaaaaggaataaatagttacacttctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG
tattaat putative branch site (score: 2)
ttacacttctctttc putative PPT
tttgttttatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttatattatcttcactttatgtgcttaccatttcttttttatttttgtattatgtacttatttggttgtactggttataagagtgtgatttaatatggatttgtgtttgttttatattaatcaaaaggaataaatagttacacttctctttcagGCTGCTTTAGTTGCTTTAGCTTCTCATGCATCTGAACCTAGCGAAGCAGAAAGATTAAAGTTCCTTTCGTCTCCTCAGGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC