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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatctctaccttagaaggaacttttactagtataagtttgatgctggtccattatgaataatttataatttttttattgtcacaatcatgtgacaaatagaagaatcattaccaactgcagattttctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA

Basic information

species Glycine max
transcript GLYMA06G10060.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10060.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtatctctaccttagaaggaacttttactagtataagtttgatgctggtccattatgaataatttataatttttttattgtcacaatcatgtgacaaatagaagaatcattaccaactgcagattttctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA
                                                              ||||| |   |  ||    | ||    |||||  ||     | || |||  | | ||||      || ||| | |||        || ||| ||  |  ||||| |||         || |||||||| || ||||||||||| || ||||| |||||||||||||| || |||||||| ||||| |||||||| || ||||| ||||||||||| ||||| |
-------------------------------------------------------------tataatatgggagattaacttcgt-gtgatcat--gaaggccacaataatt-tcaacaacc-----ttgtctctctgttt------tttaatgataata-attcatatt--------acttcagCATGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGGGAAGCAGTTCACATTCCAAACCACAAATTCACAGTGAATGTTGTGAGGAATCTTA

upper sequence: GLYMA06G10060.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtatctctaccttagaaggaacttttactagtataagtttgatgctggtccattatgaataatttataatttttttattgtcacaatcatgtgacaaatagaagaatcattaccaactgcagattttctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA
                                                             || ||     || ||  || || |  ||||    |||  ||   | ||||  |         ||||  || | ||| |||            | | ||||| | | | |   | ||  || |||| ||| || ||||||||||| || ||||| ||||||||||||||||| ||||||||| |||| ||| |||| || ||||| ||||||||||| ||||| |
-----------------------------------------------------------aaaaaaaaaagcaacttggttgtt-ttgcaat---atgaataaggtaggaattgt---------cagaccttgtctttctgc------------ttttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA

upper sequence: GLYMA06G10060.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ28057 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtatctctaccttagaaggaacttttactagtataagtttgatgctggtccattatgaataatttataatttttttattgtcacaatcatgtgacaaatagaagaatcattaccaactgcagattttctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA
                                                                                                                                  | | ||     |  | ||| ||  |   |||    ||| || |  ||    | |||| || || |||||||| |||||  ||||  |||||||||| ||||| || || ||||||||||| |||||||| || || |  || || || || || |
---------------------------------------------------------------------------------------------------------------------------------gtatgttgtcaaaggaccttgaaggaaaatgttactaaaattcggcttg---ctagCACGTCGGTTGGTGGTCTCCAACTGTCATTCGAGGTGATGACCGTGAAGCCGTCCATATTCCTAATCACAAGTTCACCGTGAGCGTCGTTAGGAACCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA
                                      ttttgttttttctcc  CT-rich tract
              aacttaaattatgttg  TA-rich tract