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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctagCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTA

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctagCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTA
                                                 | || ||   |  ||| | | |  |||||  | |     |   ||| ||||  |||   | | |  ||        |||  |  | || | | ||||||||  ||  ||||||| || ||||||||||| |||||  | ||||||  |||| | ||||||||||| ||||| || ||||| || |  || |||||||||||||||||||
------------------------------------------------tataatatgg-gagattaacttcgtgtgatcatgaaggcca-caataatttcaacaaccttgtctctct-------gttttttaatgataataattcatatta-cttcagCATGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGGGAAGCAGTTCACATTCCAAACCACAAATTCACAGTGAATGTTGTGAGGAATCTTA

upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctagCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTA
                                                 |||| | || |  | |  ||     || ||| ||  || | | |  |                |  |||        ||  ||||||| | | | ||||||  ||  ||| ||| || ||||||||||| |||||  | ||||||  |||| |||||||||||||| |||| ||  |||| || |  || ||||||||||||||||| |
-------------------------------------------------aaaaaaaaaagcaacttggt-----tgttttgcaatatgaataaggtaggaattgtcagaccttgtctttct---gcttttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctagCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTA
      atataac  putative branch site (score: 3)
                                      tttcatattttctct  putative PPT
     tatataacttcaaaaa  TA-rich tract