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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctattttttcctgtttatatgtacatacattagacacaaacacgatacttctgtatctaattctttggtaaatattatctgccagttcatttgctctataaatcattaactcttgaatattcagctggtatgttggtgttttaccatttttttcttttctttttacatttattatggattcaattttgtagATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGAT

Basic information

species Glycine max
transcript GLYMA06G09240.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203981|gb|BI426758.1|BI426758
EST:     CCCTAACTGATGGCCTGTCCAAG                         ATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCT
genomic: CCCTAACTGATGGCCTGTCCAAGgttttctatt ... aattttgtagATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCT
EST: gi|15662082|gb|BI699453.1|BI699453
EST:     TACCTCCAGCCGGAGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAG                         ATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCT
genomic: TACCTCCAGCCGGAGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAGgttttctatt ... aattttgtagATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttaccatttttttcttttctttttacatttattatggattcaattttgtagATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGAT
         atttttttcttttctt  TA-rich tract